Using cyclone - Revision history

Anmar5059: Updated required modules for Dynlib

2026-04-17T10:02:54Z

Updated required modules for Dynlib

← Older revision		Revision as of 10:02, 17 April 2026
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	*: <code>CDO</code>, <code>CDO/2.2.2-gompi-2023</code>		*: <code>CDO</code>, <code>CDO/2.2.2-gompi-2023</code>
	* Dynlib		* Dynlib
	*: See temporary solution for python. Requires in addition <code>OpenBLAS/0.3.1-GCC-7.3.0~~-2.30~~</code> ~~and~~ <code>ScaLAPACK/2.0.2-gompi-~~2018b~~-~~OpenBLAS~~-0.3.1</code>.		*: See temporary solution for python. Requires in addition <code>OpenBLAS/0.3.24-GCC-13.2.0</code>, <code>ScaLAPACK/2.2.0-gompi-2023b-fb</code>, <code>PROJ/9.3.1-GCCcore-13.2.0</code>, and <code>GEOS/3.12.1-GCC-13.2.0</code>
	* ghostview		* ghostview
	*: ''<no module required>''		*: ''<no module required>''

Ngfih at 19:37, 9 April 2026

2026-04-09T19:37:30Z

← Older revision		Revision as of 19:37, 9 April 2026
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	* PanoplyJ module is currently not working, rather use this alias for starting Panoply 5.9.1		* PanoplyJ module is currently not working, rather use this alias for starting Panoply 5.9.1
	*:alias panoply='/vol/vb_apps/software/PanoplyJ/5.9.1-Java-25.36/panoply.sh'		*:alias panoply='/vol/vb_apps/software/PanoplyJ/5.9.1-Java-25.36/panoply.sh'
	*:For MacBook users it may be necessary tor run this XQuarts config (while XQuarts completely off):		*:For MacBook users it may be necessary tor run this XQuarts config via terminal (while XQuarts completely off):
	*:defaults write org.xquartz.X11 enable_render_extension 0		*:defaults write org.xquartz.X11 enable_render_extension 0
	* NCL module is currently not working, rather use the alias below for NCL 6.6.2:		* NCL module is currently not working, rather use the alias below for NCL 6.6.2:

Ngfih at 19:36, 9 April 2026

2026-04-09T19:36:17Z

← Older revision		Revision as of 19:36, 9 April 2026
Line 80:		Line 80:
	* PanoplyJ module is currently not working, rather use this alias for starting Panoply 5.9.1		* PanoplyJ module is currently not working, rather use this alias for starting Panoply 5.9.1
	*:alias panoply='/vol/vb_apps/software/PanoplyJ/5.9.1-Java-25.36/panoply.sh'		*:alias panoply='/vol/vb_apps/software/PanoplyJ/5.9.1-Java-25.36/panoply.sh'
			*:For MacBook users it may be necessary tor run this XQuarts config (while XQuarts completely off):
			*:defaults write org.xquartz.X11 enable_render_extension 0
	* NCL module is currently not working, rather use the alias below for NCL 6.6.2:		* NCL module is currently not working, rather use the alias below for NCL 6.6.2:
	*: <code>NCL</code>, <code>NCL/6.5.0</code>		*: <code>NCL</code>, <code>NCL/6.5.0</code>

Ngfih at 19:25, 9 April 2026

2026-04-09T19:25:48Z

← Older revision		Revision as of 19:25, 9 April 2026
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	* ncdump and other netCDF utilities		* ncdump and other netCDF utilities
	*: <code>netCDF</code>, <code>netCDF/4.9.2-gompi-2023b</code>		*: <code>netCDF</code>, <code>netCDF/4.9.2-gompi-2023b</code>
			* PanoplyJ module is currently not working, rather use this alias for starting Panoply 5.9.1
			*:alias panoply='/vol/vb_apps/software/PanoplyJ/5.9.1-Java-25.36/panoply.sh'
	* NCL module is currently not working, rather use the alias below for NCL 6.6.2:		* NCL module is currently not working, rather use the alias below for NCL 6.6.2:
	*: <code>NCL</code>, <code>NCL/6.5.0</code>		*: <code>NCL</code>, <code>NCL/6.5.0</code>

Ngfih at 19:09, 9 April 2026

2026-04-09T19:09:01Z

← Older revision		Revision as of 19:09, 9 April 2026
Line 78:		Line 78:
	* ncdump and other netCDF utilities		* ncdump and other netCDF utilities
	*: <code>netCDF</code>, <code>netCDF/4.9.2-gompi-2023b</code>		*: <code>netCDF</code>, <code>netCDF/4.9.2-gompi-2023b</code>
	* NCL		* NCL module is currently not working, rather use the alias below for NCL 6.6.2:
	*: <code>NCL</code>, <code>NCL/6.5.0</code> ~~NCL module is currently not working, rather use the following alias~~:alias ncl-activate='conda activate /Data/gfi/users/local/share/envs/ncl_stable'		*: <code>NCL</code>, <code>NCL/6.5.0</code>
			*:alias ncl-activate='conda activate /Data/gfi/users/local/share/envs/ncl_stable'
	* nco		* nco
	*: <code>NCO</code>, <code>NCO/5.1.9-foss-2023a</code>		*: <code>NCO</code>, <code>NCO/5.1.9-foss-2023a</code>

Ngfih at 18:50, 9 April 2026

2026-04-09T18:50:17Z

← Older revision		Revision as of 18:50, 9 April 2026
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	*: <code>netCDF</code>, <code>netCDF/4.9.2-gompi-2023b</code>		*: <code>netCDF</code>, <code>netCDF/4.9.2-gompi-2023b</code>
	* NCL		* NCL
	*: <code>NCL</code>, <code>NCL/6.5.0</code>		*: <code>NCL</code>, <code>NCL/6.5.0</code> NCL module is currently not working, rather use the following alias:alias ncl-activate='conda activate /Data/gfi/users/local/share/envs/ncl_stable'
	* nco		* nco
	*: <code>NCO</code>, <code>NCO/5.1.9-foss-2023a</code>		*: <code>NCO</code>, <code>NCO/5.1.9-foss-2023a</code>

Ngfih: /* Displaying GUIs on your screen */

2026-03-26T12:53:13Z

Displaying GUIs on your screen

← Older revision		Revision as of 12:53, 26 March 2026
Line 156:		Line 156:
	== Displaying GUIs on your screen ==		== Displaying GUIs on your screen ==

	The ssh-login command at the top of this wiki enables trusted X11 forwarding (the <code>-Y</code> option), which allows you to display Graphical User Interfaces (GUIs) on your screen. Inclusion of <code>-C</code> option as well is an advantage for speeding up the X11 response. This way you may be able to run software on a high performance system in a more userfriendly way than by just operating via the terminal. To make this work properly you may have to edit the ssh configuration file (<code>~/.ssh/config</code> on linux systems) by adding the following ~~two~~ lines:		The ssh-login command at the top of this wiki enables trusted X11 forwarding (the <code>-Y</code> option), which allows you to display Graphical User Interfaces (GUIs) on your screen. Inclusion of <code>-C</code> option as well is an advantage for speeding up the X11 response. This way you may be able to run software on a high performance system in a more userfriendly way than by just operating via the terminal. To make this work properly you may have to edit the ssh configuration file (<code>~/.ssh/config</code> on linux and macos systems) by adding the following lines:

	<pre>ForwardX11 yes		<pre>ForwardX11 yes

Ngfih: /* Displaying GUIs on your screen */

2026-03-26T12:43:54Z

Displaying GUIs on your screen

← Older revision		Revision as of 12:43, 26 March 2026
Line 158:		Line 158:
	The ssh-login command at the top of this wiki enables trusted X11 forwarding (the <code>-Y</code> option), which allows you to display Graphical User Interfaces (GUIs) on your screen. Inclusion of <code>-C</code> option as well is an advantage for speeding up the X11 response. This way you may be able to run software on a high performance system in a more userfriendly way than by just operating via the terminal. To make this work properly you may have to edit the ssh configuration file (<code>~/.ssh/config</code> on linux systems) by adding the following two lines:		The ssh-login command at the top of this wiki enables trusted X11 forwarding (the <code>-Y</code> option), which allows you to display Graphical User Interfaces (GUIs) on your screen. Inclusion of <code>-C</code> option as well is an advantage for speeding up the X11 response. This way you may be able to run software on a high performance system in a more userfriendly way than by just operating via the terminal. To make this work properly you may have to edit the ssh configuration file (<code>~/.ssh/config</code> on linux systems) by adding the following two lines:

	<pre>~~X11Forwarding~~ yes		<pre>ForwardX11 yes
	ForwardX11Trusted yes		ForwardX11Trusted yes
	Compression yes</pre>		Compression yes</pre>

Ngfih: /* Displaying GUIs on your screen */

2026-03-26T12:27:13Z

Displaying GUIs on your screen

← Older revision		Revision as of 12:27, 26 March 2026
Line 156:		Line 156:
	== Displaying GUIs on your screen ==		== Displaying GUIs on your screen ==

	The ssh-login command at the top of this wiki enables trusted X11 forwarding (the <code>-Y</code> option), which allows you to display Graphical User Interfaces (GUIs) on your screen. This way you may be able to run software on a high performance system in a more userfriendly way than by just operating via the terminal. To make this work properly you may have to edit the ssh configuration file (<code>~/.ssh/config</code> on linux systems) by adding ~~or uncommenting~~ the following two lines:		The ssh-login command at the top of this wiki enables trusted X11 forwarding (the <code>-Y</code> option), which allows you to display Graphical User Interfaces (GUIs) on your screen. Inclusion of <code>-C</code> option as well is an advantage for speeding up the X11 response. This way you may be able to run software on a high performance system in a more userfriendly way than by just operating via the terminal. To make this work properly you may have to edit the ssh configuration file (<code>~/.ssh/config</code> on linux systems) by adding the following two lines:

	<pre>X11Forwarding yes		<pre>X11Forwarding yes
	ForwardX11Trusted yes</pre>		ForwardX11Trusted yes
			Compression yes</pre>

	~~For Mac the solution should be pretty similar when using XQuartz, windows may~~ require additional terminal software (for establishing an ssh-connection) with inclusion of an XServer (e.g. MobaXterm, WSL or VcXsrv) or [https://hjelp.uib.no/tas/public/ssp/content/detail/service?unid=a9cc906b686940498f0cf68882fc5d20 NoMachine] - and some still prefer Putty.		Windows will require additional terminal software (for establishing an ssh-connection) with inclusion of an XServer (e.g. MobaXterm, WSL or VcXsrv) or [https://hjelp.uib.no/tas/public/ssp/content/detail/service?unid=a9cc906b686940498f0cf68882fc5d20 NoMachine] - and some still prefer Putty.

			For Mac the solution should be pretty similar when using XQuartz - for Tahoe and later macos versions it may come necessary with the following initial setting for Xquartz, entered from your Mac command shell:<pre>defaults write org.xquartz.X11 enable_render_extension 0</pre>

			And it may come fortunate with later follow up toggling "Full-screen mode" in XQuarts settings -> Output.

Ngfih: /* Accessing the data from your own machines */

2026-03-20T12:57:40Z

Accessing the data from your own machines

← Older revision		Revision as of 12:57, 20 March 2026
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	From ext. networks, please connect to UiB vpn first.		From ext. networks, please connect to UiB vpn first.
	Unmount with: fusermount -u ~/cyclone_gfi</pre>		Unmount with: fusermount -u ~/cyclone_gfi</pre>
	For access to Sigma2 storage resources via sshfs access from cyclones, defining the following aliases can be convenient for mount and umount towards ~/sigma2 - and similar can be done from Sigma2-resource for access to cyclones storage resource:<pre>alias mountsigma2="mkdir ~/sigma2; sshfs <userid>@<sigma2-host>:<sigma2_path> ~/sigma2 -o reconnect,ServerAliveInterval=15,follow_symlinks,uid=$(id -u),gid=$(id -g)"		For access to Sigma2 storage resources via sshfs access from cyclones, defining the following aliases can be convenient for mount and umount towards ~/sigma2 - and similar can be done from Sigma2-resource for access to cyclones storage resource:<pre>alias mountsigma2="mkdir ~/sigma2; sshfs <userid>@<sigma2-host>:<sigma2_path> ~/sigma2 -o reconnect,ServerAliveInterval=15,ServerAliveCountMax=3,follow_symlinks,uid=$(id -u),gid=$(id -g)"
	alias umountsigma2="cd ; chmod go+rx ~/; fusermount -u ~/sigma2; chmod go-rx ~/; rmdir ~/sigma2"		alias umountsigma2="cd ; chmod go+rx ~/; fusermount -u ~/sigma2; chmod go-rx ~/; rmdir ~/sigma2"
	</pre>		</pre>